1gcc_A : 3D-footprint complex

structure name	SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)
source	ARABIDOPSIS THALIANA
experiment	NMR
structural superfamily	DNA-binding domain;
sequence family	AP2 domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gcc_A interface=7,9,11,17,19,27,29, khyrgvRqRpWgkfaaEiRdpakngaRvWlgtfetaedaalaydraafrmrgsrallnfplrv
interface signature	RRWERRW

Estimated binding specificities ?

readout + contact

# IC=9.251 IC/col=1.028 n_of_columns=9

specificity:

A |   8  87   0   0   0   0   8   0  72
C |   8   0   0  96  96   0  72  96   8
G |  11   0  96   0   0  96   8   0   8
T |  69   9   0   0   0   0   8   0   8

scan!

Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: ATERF1
AGCCGCC	PubMed	1gcc_A(8.04e-11)
GCCGCC	PubMed	1gcc_A(1.18e-08)

Dendrogram of similar interfaces ?

matrix format

  
  RGRG----EC--RG------RGWC   L                         +5wx9_A    
                                      +----------------1 
  RGRGWA--EC--RG------RGWC   L   +----2                +1gcc_A    
                                 !    ! 
  --RT--------------------   L --3    +----------------6kdn_A    
                                 ! 
  --KA--YT--KG--RGECSARG--   L   +---------------------3rmp_A

home
updated Tue Dec 19 05:39:37 2023