| structure name | CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS (DNA-BINDING PROTEIN 7A) |
| reference | Edmondson et al. J.Mol.Biol. 303 395 2000 |
| source | SULFOLOBUS SOLFATARICUS |
| experiment | X-ray (resolution=1.45, R-factor=0.229) |
| structural superfamily | Chromo domain-like; |
| sequence family | 7kD DNAbinding domain; |
| redundant complexes | 1bnz 1bbx 1bf4 |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YWVMSRA |
Estimated binding specificities ?
| readout + contact |  |
A | 0 54 13 0 0 C | 0 13 16 96 0 G | 96 16 13 0 96 T | 0 13 54 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SSO7D | ||
| GTAATTAC | PubMed | 1bnz_A(1.64e-06) |
| GTAAT | PubMed | 1bnz_A(1.35e-04) |
| GCGAACGC | PubMed | 1c8c_A(1.26e-02), 1bf4_A(1.08e-07) |
| GTGATCGC | PubMed | 1c8c_A(3.67e-06) |
| GTGATCAC | PubMed | 1c8c_A(3.03e-03) |
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updated Mon Dec 18 04:59:33 2023