interface graph thumbnail
legend  pdf

structure nameSSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX
(DNA-BINDING PROTEIN 7A)
referencePadmanabhan et al. Nat.Struct.Biol. 5 782 1998
sourceSULFOLOBUS ACIDOCALDARIUS
experimentX-ray (resolution=2.00, R-factor=0.168)
structural superfamilyChromo domain-like;
sequence family7kD DNAbinding domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYWVMSRA

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5 specificity:   
A |  96  96   9   9  67
C |   0   0   9  11  11
G |   0   0  11   9   9
T |   0   0  67  67   9
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updated Mon Dec 18 04:58:36 2023