DNA Binding Motif

Accessions: 1o3r_A (3D-footprint 20231221)
Names: CATABOLITE GENE ACTIVATOR PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Length: 8
Consensus: AAntGcGA
Weblogo:
PSSM: P0 A C G T
01 84 0 0 12 A
02 96 0 0 0 A
03 24 24 24 24 n
04 12 12 12 60 t
05 0 0 96 0 G
06 12 60 12 12 c
07 0 0 96 0 G
08 96 0 0 0 A
Binding TFs: 1o3r_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1o3r_B
1o3r_C
Publications: Chen S, Vojtechovsky J, Parkinson G.N, Ebright R.H, Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking. Journal of molecular biology 314:63-74 (2001). [Pubmed]

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