DNA Binding Motif

Accessions: 6q2b_AB (3D-footprint 20231221)
Names: MarR family transcriptional regulator
Organisms: Listeria monocytogenes serovar 1/2a, strain ATCC BAA-679 / EGD-e
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of Putative MarR Family Transcriptional Regulator from Listeria monocytogenes complexed with 26mer DNA
Length: 20
Consensus: ATTgTTrCnnnnGCAAyAAT
Weblogo:
PSSM: P0 A C G T
01 88 3 1 4 A
02 0 0 0 96 T
03 3 1 4 88 T
04 23 11 57 5 g
05 9 11 9 67 T
06 0 0 0 96 T
07 54 0 42 0 r
08 0 96 0 0 C
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 0 0 96 0 G
14 0 96 0 0 C
15 96 0 0 0 A
16 81 9 5 1 A
17 17 49 5 25 y
18 95 1 0 0 A
19 96 0 0 0 A
20 0 0 0 96 T
Binding TFs: 6q2b_A / 6q2b_B (MarR family, B-block binding subunit of TFIIIC, Winged helix DNA-binding domain)
Binding Sites: 6q2b_C / 6q2b_D

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