DNA Binding Motif

Accessions: 3zql_B (3D-footprint 20231221)
Names: PUTATIVE REPRESSOR SIMREG2
Organisms: Streptomyces antibioticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DNA-bound form of TetR-like repressor SimR
Length: 8
Consensus: TTCGTACG
Weblogo:
PSSM: P0 A C G T
01 9 11 9 67 T
02 11 9 9 67 T
03 9 67 11 9 C
04 0 0 96 0 G
05 0 0 0 96 T
06 96 0 0 0 A
07 0 96 0 0 C
08 0 0 96 0 G
Binding TFs: 3zql_B (Bacterial regulatory proteins, tetR family, Tetracyclin repressor, C-terminal all-alpha domain)
Binding Sites: 3zql_E
3zql_F
Publications: Le T.B, Schumacher M.A, Lawson D.M, Brennan R.G, Buttner M.J. The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding. Nucleic acids research 39:9433-47 (2011). [Pubmed]

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