DNA Binding Motif

Accessions: 2cgp_A (3D-footprint 20231221)
Names: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 6
Consensus: tGTGAc
Weblogo:
PSSM: P0 A C G T
01 10 10 12 64 t
02 0 0 96 0 G
03 0 12 10 74 T
04 0 0 96 0 G
05 96 0 0 0 A
06 10 64 10 12 c
Binding TFs: 2cgp_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 2cgp_B
2cgp_C
Publications: Passner JM., Steitz TA. The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc Natl Acad Sci U S A. 94(7):2843-7 (1997). [Pubmed]

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