DNA Binding Motif

Accessions: 2v2t_AB (3D-footprint 20231221)
Names: TRANSCRIPTION FACTOR RELB
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: X-ray structure of a NF-kB p50-RelB-DNA complex
Length: 10
Consensus: GGkAAnTcCC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 96 0 G
03 10 5 55 26 k
04 96 0 0 0 A
05 81 5 5 5 A
06 24 24 24 24 n
07 10 5 12 69 T
08 5 58 16 17 c
09 0 96 0 0 C
10 0 96 0 0 C
Type: Heterodimer
Binding TFs: 2v2t_A (Rel homology domain (RHD))
2v2t_B (Rel homology domain (RHD))
Binding Sites: 2v2t_C / 2v2t_D
Publications: Moorthy A.K, Huang D.B, Wang V.Y, Vu D, Ghosh G. X-ray structure of a NF-kappaB p50/RelB/DNA complex reveals assembly of multiple dimers on tandem kappaB sites. Journal of molecular biology 373:723-34 (2007). [Pubmed]

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