2v2t_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF A NF-KB P50-RELB-DNA COMPLEX
reference	Moorthy et al. J.Mol.Biol. 373 723 2007
source	MUS MUSCULUS
experiment	X-ray (resolution=3.05, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2v2t_A interface=18,20,21,23,24,175, cprpylviteqpkqrgmRfRYeCEgrsagsilgessteasktqpaielrdcgglrevevtaclvwkdwphrvhphslvgkdctdgvcrvrlrphvsprhsfnnlgiqcvrkkeieaaierkiqlgidpynagslknhqevdmnvvricfqasyrdqqghlhrmdpilsepvydkKstntselricrinkesgpctggeelyllcdkvqkedisvvfstaswegradfsqadvhrqiaivfktppyedleisepvtvnvflqrltdgvcseplpftylpr > 2v2t_B interface=17,19,20,22,23,27,204, dgpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCEK/RRYCEHK

Estimated binding specificities ?

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# IC=8.685 IC/col=0.869 n_of_columns=10

specificity:

A |   0   0  13  96  78  24  16   0   0   0
C |   0   0   6   0   6  24   6  75  96  96
G |  96  96  57   0   6  24  13  13   0   0
T |   0   0  20   0   6  24  61   8   0   0

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updated Fri Dec 15 12:53:27 2023