DNA Binding Motif

Accessions: 1jt0_C (3D-footprint 20231221)
Names: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION
Organisms: Staphylococcus aureus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a cooperative QacR-DNA complex
Length: 7
Consensus: ATAGACC
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 0 0 0 96 T
03 69 8 11 8 A
04 8 8 72 8 G
05 87 1 8 0 A
06 0 96 0 0 C
07 8 69 11 8 C
Binding TFs: 1jt0_C (Bacterial regulatory proteins, tetR family, QacR-like protein, C-terminal region)
Binding Sites: 1jt0_E / 1jt0_F
Publications: Schumacher M.A, Miller M.C, Grkovic S, Brown M.H, Skurray R.A, Brennan R.G. Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR. The EMBO journal 21:1210-8 (2002). [Pubmed]

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