DNA Binding Motif

Accessions: 1qrv_A (3D-footprint 20231221)
Names: HIGH MOBILITY GROUP PROTEIN D
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Length: 6
Consensus: gATAnc
Weblogo:
PSSM: P0 A C G T
01 13 13 57 13 g
02 74 7 7 8 A
03 0 0 0 96 T
04 88 2 4 2 A
05 24 24 24 24 n
06 18 42 18 18 c
Binding TFs: 1qrv_A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 1qrv_C
1qrv_D
Publications: Murphy F.V, Sweet R.M, Churchill M.E. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. The EMBO journal 18:6610-8 (1999). [Pubmed]

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