1qrv_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA (HIGH MOBILITY GROUP PROTEIN D)
reference	Churchill et al. 'EMBO 18 6610 1999
source	Drosophila melanogaster
experiment	X-ray (resolution=2.20, R-factor=0.238)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
multimeric complexes	1qrv_AB
redundant complexes	1e7j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1qrv_A interface=6,9,11,12,15,19,31,32,35, sdkpkRplSaYMlwLnsaResikrenpgikVTevAkrggelwramkdkseweakaakakddydravkefeang
interface signature	RSYMLRVTA

Estimated binding specificities ?

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# IC=3.246 IC/col=0.541 n_of_columns=6

specificity:

A |  13  74   0  88  24  18
C |  13   7   0   2  24  42
G |  57   7   0   4  24  18
T |  13   8  96   2  24  18

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KCRC--YTMALTRA--VCTG--AAVCEC   L                       +-1qrv_A    
                                                 +-------1 
  --RC--FAFTCG----IC--VGAG----   L          +----2       +-2gzk_A    
                                            !    ! 
  --RGNTFTMA--RT--NGRT--SA----   L   +------3    +---------7m5w_A    
                                     !      ! 
  --RCNTFTMA--RAHGNT----SA----   L --4      +--------------3f27_D    
                                     ! 
  ------YA--------FT----SG----       +---------------------5ze0_N

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updated Tue Dec 19 06:03:00 2023