DNA Binding Motif

Accessions: 5k5l_F (3D-footprint 2022-04-03)
Names: Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Homo sapiens CCCTC-binding factor (CTCF) ZnF6-8 and H19 sequence DNA complex structure
Length: 4
Consensus: gCGg
Weblogo:
PSSM: P0 A C G T
01 10 10 63 13 g
02 8 72 8 8 C
03 0 0 96 0 G
04 19 19 39 19 g
Binding TFs: 5k5l_F (Zinc finger, C2H2 type, C2H2-type zinc finger)
Binding Sites: 5k5l_C
5k5l_D
Publications: Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X. Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol Cell 66:711-720 (2017). [Pubmed]

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