8jo2_CDFHI : 3D-footprint complex

Interface of input file ?

structure name	STRUCTURAL BASIS OF TRANSCRIPTIONAL ACTIVATION BY THE OMPR/PHOB- FAMILY RESPONSE REGULATOR PMRA
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jo2_C interface=180,181,185,195,197,198,365,369,372,392,468,471,495,502,506,512,540, ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrgSWldfEfdpkdnlfvRiDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiYrmmRpgEpptreaaeslfenlffsedRydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRveRavkerlslgdldtlmpqdminakPisaavkEffgSsqlsqFmdqnnplseithkrrisalgpggltreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 8jo2_D interface=106,300,306,308,320,776,777, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksLpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgRaitgsNkRplksladmikgKqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmaaaessiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 8jo2_F interface=18,20,21,24,27,32,34,38,267,269,270,280,281,303,304,307,309,312,313,314,316,317,318,321,338,339,345,348,349,393,394,395,397,400,401,406,472, aaaqvlssveseigrttDpVRmyMreMgtveLlTregEidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaensidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNRglqfldliqegniglmkavdkFEyrRgYkfSTYaTWWirQaitrsiadqartiripVHmietiNklNRisrqmlqemgreptpeelaermlmpedkirkvlkiakepismeTPIgDdeDShlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtreriRqieakalrklrhpsrsevlrsfldd > 8jo2_H interface=187,188,191,192,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVhiHnlrekigksrirtvRgfgymlann > 8jo2_I interface=187,188,191,192,193,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVHihnlrekigksrirtvRgfgymlann
interface signature	SWERDRYRERRRPESFR/LRNRKTA/DVRMMLTENRLNRFERYSTYTWWQVHNNRTPIDDSFR/TNEVHR/TNEVHR

Estimated binding specificities ?

contact

# IC=18.467 IC/col=0.284 n_of_columns=65

specificity:

A |  24  24  24  24  24  21  22  24  24  24  14  96   0  13   9   2   0  96   0   0  96   0   2  87   0  85  22  24  31  24  16  24  21  18  20  21  15  24  23  14  36  24  24  24  22  38  25  19  27  60  10  49  24  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  31  22  24  24  24  16   0  96  13  69   2   0   0   0   0   0   0   2   3   0   5  30  24  21  24  45  24  21  18  34  21  15  24  21  14  20  24  24  24  20  19  22  19  25  12  10  15  24  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  21  30  24  24  24  52   0   0  13   9  88   0   0  96  96   0   0   4   3   0   3  22  24  23  24  16  24  23  42  20  21  17  24  31  54  20  24  24  24  20  19  22  19  22  12  66  17  24  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  23  22  24  24  24  14   0   0  57   9   4  96   0   0   0   0  96  88   3  96   3  22  24  21  24  19  24  31  18  22  33  49  24  21  14  20  24  24  24  34  20  27  39  22  12  10  15  24  24  24  24  24  24  24  24  24  24  24  24  24

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updated Mon Dec 18 01:40:17 2023