8gap_AD : 3D-footprint complex

structure name	STRUCTURE OF LARP7 PROTEIN P65-TELOMERASE RNA COMPLEX IN TELOMERASE
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8gap_A interface=339,484,488,828, kqmltrkedlltvlkqisalkyvsnlyefllatekivqtseldtqfqefltttiiaseqnlvenykqkynqpnfsqltikqviddsiillgnkqnyvqqigtttigfyveyeninlsrqtlyssnfrnllnifgeedfkyflidflvftkveqngylqvagvclnqyfsenqyiypeiqrsqifycnhmgrepgvfkssffnysepqtiikktllkeyqsknfscqeerdlfleftekivqnfhninfnyllkkfcklpenyqslksqvkqivqsenkanqqscenlfnslydteisykqitnflrqiiqncvpnqllgkknfkvfleklyefvqmkrFenqkvldyicfmdvfdvewfvdlknqkftqkrkyisdkrkilgdlivfiinkivipvlrynfyitekhkegsqifyyrkpiwklvskltivkleeenlekveeklipedsfqkypqgklriipkkgsfrpimtflrkdkqknikLnlnQilmdsqlvfrnlkdmlgqkigysvfdnkqisekfaqfiekwknkgrpqlyyvtldikkcydsidqmkllnffnqsdliqdtyfinkyllfqrnkrpllqimdninfpyyfnlkerqiayslyddddqilqkgfkeiqsddrpfivinqdkprcitkdiihnhlkhisqynvisfnkvkfrqkrgipqglnisgvlcsfyfgkleeeytqflknaeqvngsinllmrltddylfisdsqqnalnlivqlqncannngfmfndqkittnfqfpqedynlehfkisvqnecqwigksidmntleiksiqkqtqqeinqtinvaisiknlksqlknklrslflNqlidyfnpninsfeglcrqlyhhskatvmkfypfmtklfqidlkkskqysvqygkentnenflkdilyytvedvckilcylqfedeinsnikeifknlyswimwdiivsylkkkkqfkgylnkllqkirksrffylkegckslqlilsqqkyqlnkkeleaiefidlnnliqdiktlipkisak > 8gap_D interface=93,150,152,157,159,161,163, qriyssieeiiqqaqaseigqkkefyvygnlvsiqmknklyyyrctcqgksvlkyhgdsffcescqqfinpqvhlmlrafvqdstgtipvmiFdqqssqlinqidpsihvqeagqyvknciengqeeiirqlfskldfarfifeiqfenKeFnneqEiAyKvLkiekenikeeskyllkklehlinn
interface signature	FLQN/FKFEAKL

Estimated binding specificities ?

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# IC=5.875 IC/col=0.420 n_of_columns=14

specificity:

A |   0   9   0   0  24  24  24  24  24   0  16  24  24  24
C |   0   9   0   0  24  24  24  24  24   0  16  24  24  24
G |  96  67  96   0  24  24  24  24  24   0  19  24  24  24
T |   0  11   0  96  24  24  24  24  24  96  45  24  24  24

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updated Mon Dec 18 00:01:32 2023