8c5u_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG (IC8)
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
sequence family	Ribosomal RNA adenine dimethylase;
multimeric complexes	6ymv_AB 6ymw_AB
reference complex	6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8c5u_B interface=17,77,100,102,103,104,142,143,145,147,148, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqyslleKrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegSEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmd
interface signature	YKDYDWSELMQ

Estimated binding specificities ?

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# IC=3.861 IC/col=0.121 n_of_columns=32

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  24  45  21   0  24  96   2  31  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24  24  16  31  96  24   0  90  21  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24  24  16  23   0  24   0   2  21  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24  24  19  21   0  24   0   2  23  24  24  24  24  24  24  24  24  24  24  24  24

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updated Tue Dec 19 02:32:20 2023