8c5s_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 7-MER RNA, PPPGPGPUPAPAPAPU (IC7)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8c5s_A interface=141,220,222,224,225,360,364,370,371,374,377,407,411,595,599,602,604,605,606,607,612,709,716,718,731,739,743, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnstggvIegmrtaravisvgkaiemefrseqvlkkilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilRawkLqvktiANkfSsdRsnrcdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVTYVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqTvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalelsgmsvllplrlpeippkgdfdvtvlrnsqyffs > 8c5s_B interface=17,100,102,103,104,143,145,147,148,335, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdmyQt
interface signature	IYNSKRLANSRRYQTYVTYVQQTFRPH/YDYDWELMQQ

Estimated binding specificities ?

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# IC=10.729 IC/col=0.383 n_of_columns=28

specificity:

A |  24  24  24  24  24  22  21   0  96  14  20  24  31  24   0   0  96   8  63  96   0  57  21  24  24  24  24  24
C |  24  24  24  24  24  22  21  96   0  16  20  24  23  24  96   0   0  70  10   0   0  13  23  24  24  24  24  24
G |  24  24  24  24  24  22  33   0   0  14  20  24  21  24   0  96   0   8  13   0   0  13  21  24  24  24  24  24
T |  24  24  24  24  24  30  21   0   0  52  36  24  21  24   0   0   0  10  10   0  96  13  31  24  24  24  24  24

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updated Sun Dec 17 20:07:11 2023