8att_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4)
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
sequence family	Ribosomal RNA adenine dimethylase;
multimeric complexes	6ymv_AB 6ymw_AB
reference complex	6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8att_B interface=53,100,102,103,104,143,145,147,148,333,334,338, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMYqteHsg
interface signature	YDYDWELMQMYH

Estimated binding specificities ?

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# IC=3.915 IC/col=0.151 n_of_columns=26

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  92   0  16  96  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  24  24  24   1   0  16   0  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  24  24  24   1  96  19   0  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  24  24  24   2   0  45   0  24  24  24  24  24  24  24  24  24  24

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updated Tue Dec 19 02:16:15 2023