8ap1_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH TWO GTP MOLECULES POISED FOR DE NOVO INITIATION (IC2)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ap1_A interface=142,145,173,219,220,221,223,224,278,406,594,598,601,603,606,610,611,706,708,717,718,730,738,742, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakarknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnstggviegmrtaRavIsvgkaiemefrseqvlksesqakilwpQsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYHNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllRtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfRgrayplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVtyVgatFQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreesKkQvetnlqtvFIsdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldamsvllplrlpeippkgdfdvtvlrnsqyffs > 8ap1_B interface=15,102,104,143,145,147,148,334,335, svpipgikdisklkFfygfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrdpYdWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdmYQtehs
interface signature	RIQYHNSKRRQTYVVFQKQFIRPH/FYWELMQYQ

Estimated binding specificities ?

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# IC=8.534 IC/col=0.316 n_of_columns=27

specificity:

A |  24  24  24  21  24  24  24  24  21  52   0   0  12  96   4  85  81   0  56  24  24  24  24  24  24  24  24
C |  24  24  24  21  24  24  24  24  21  16  96  96  12   0  81   5   4   0  13  24  24  24  24  24  24  24  24
G |  24  24  24  21  24  24  24  24  23  14   0   0  60   0   4   3   4   0  14  24  24  24  24  24  24  24  24
T |  24  24  24  33  24  24  24  24  31  14   0   0  12   0   7   3   7  96  13  24  24  24  24  24  24  24  24

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updated Sun Dec 17 19:05:27 2023