7w7l_AB : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO 13-MER A/T-CENTRIC P- SELECTIN KB DNA FRAGMENT
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	7cli_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7w7l_A interface=20,22,23,26,30,189, etadgpylviveqpkqrgfRfRYgcEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyy > 7w7l_B interface=19,21,22,25,29,188, tadgpylviveqpkqrgfRfRYgcEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp
interface signature	RRYEHK/RRYEHK

Estimated binding specificities ?

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# IC=11.579 IC/col=0.965 n_of_columns=12

specificity:

A |   0   0   0   0  16  24  56   0   0   0   0  64
C |   0   0   0   0   8  24  16  96  96  96  96  16
G |  96  96  96  96  16  24   8   0   0   0   0   8
T |   0   0   0   0  56  24  16   0   0   0   0   8

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updated Sun Dec 17 14:51:27 2023