7w5y_ACDFK : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF SOXS-DEPENDENT TRANSCRIPTION ACTIVATION COMPLEX WITH FPR PROMOTER DNA
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7w5y_A interface=246,275, teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpNlteikdvlasrglslgmrlenwppa > 7w5y_C interface=173,181,183,197,198,365,369,372,467,501,538,539, ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynaRiipyrgsWlDfefdpkdnlfvriDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiYrmmRpgEpptreaaeslfenlffsedrydlavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRveravkerlslgdldtlmpqdminakpisaavkEffgssqlsqfmvqnnplseithkrrisalgpggltrERagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelglteekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 7w5y_D interface=303,304,306,774,775, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkssrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgSNkRplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 7w5y_F interface=21,24,32,267,269,270,280,303,304,307,309,312,313,314,316,317,318,321,327,339,342,345,348,386,387,394,396,399,405,457,466,468,469,471, aaaqvlssveseigrttdpvRmyMremgtveLltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaensidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNrglqfldliqegniglmkavdkFEyrRgYkfSTYaTWWirQaitrsIadqartiripvHmiEtiNklNrisrqmlqemgreptpeelaermlmpedkirkvlkiaKEpsmetpIgDdeDshlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytlEevgkqfdvTrERiRqieakalrklrhpsrsevlrsfldd > 7w5y_K interface=34,36,37,39,40,85,86,87,90, mshqkiiqdliawidehidqplnidvvakksgySkWYlQRmfrtvthqtlgdyirqrrlllaavelrtterpifdiamdlgyvsQQTfsRvfrrqfdrtpsdyrhrl
interface signature	RN/RWDDRYREREER/SNRTA/RMLNRLNFERYSTYTWWQIHENNKEIDDFETERR/SWYQRQQTR

Estimated binding specificities ?

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# IC=39.881 IC/col=0.595 n_of_columns=67

specificity:

A |   0  96   0   4  24   4  71   0   0   0   0  96  96   0  96  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24   5   5   0   0  96   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96  24  24  24  11   7  71  90
C |   0   0   0   1  24   1  11   0   0   0   0   0   0   0   0   0   0  24  24  92   0  24  24  24  24  24  24  24  24  24  24  24  24  24   7   8  96  96   0   0  24  24  96   0  24  24  24  24  24  24  24  24  24  24  24  24  96   0  96   0  24  24  24   7  76   9   4
G |  96   0  96   1  24  90   7  96  96  96   0   0   0   0   0   0  96  24  24   3   0  24  24  24  24  24  24  24  24  24  24  24  24  24   8   3   0   0   0  96  24  24   0  96  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  24  24   9   5   7   1
T |   0   0   0  90  24   1   7   0   0   0  96   0   0  96   0   0   0  24  24   1  96  24  24  24  24  24  24  24  24  24  24  24  24  24  76  80   0   0   0   0  24  24   0   0  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0  24  24  24  69   8   9   1

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updated Sun Dec 17 14:46:43 2023