7vn4_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 (21-90) IN COMPLEX WITH DOUBLE-STRANDED DNA CONTANING TCCACGTGGA
reference	Tanokura et al. Nat.Plants ? ? 2022
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;
reference complex	7vn3_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vn4_C interface=372,382,385,386,389,390, mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpaaafqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrerenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr > 7vn4_D interface=372,382,385,386,389,390, mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpaaafqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrerenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr
interface signature	RNRERR/RNRERR

Estimated binding specificities ?

readout + contact

# IC=9.404 IC/col=0.940 n_of_columns=10

specificity:

A |   4   5   0  65   0   0  15   2   2  87
C |  16  87  96  16  96   0   2   2   0   5
G |  13   2   0  13   0  96  16  87  94   2
T |  63   2   0   2   0   0  63   5   0   2

scan!

home
updated Sun Dec 17 13:53:22 2023