7qv9_Mb
citing 3d-footprint
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atomic interactions
interface residue numbers
structure name
CRYOEM STRUCTURE OF BACTERIAL TRANSCRIPTION INTERMEDIATE COMPLEX MEDIATED BY ACTIVATOR PSPF
experiment
NMR
structural superfamily
Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;cAMP-binding domain-like;"Winged helix" DNA-binding domain;P-loop containing nucleoside triphosphate hydrolases;Putative DNA-binding domain;beta and beta-prime subunits of DNA dependent RNA-polymerase;Nucleic acid-binding proteins;Rho N-terminal domain-like;Probable bacterial effector-binding domain;Homeodomain-like;lambda repressor-like DNA-binding domains;CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex
3iyd_A
3iyd_H
5nss_G
6jnx_P
6ldi_G
6p18_P
6psq_M
6vu3_A
6vz3_A
6xas_B
6xh7_H
6xl5_H
7c97_K
7vwz_G
7w5x_A
8igr_C
8jo2_H
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 7qv9_M interface=15,16,17,18,19,20,22,23,268,271,272,275,317,319,320,322,323,395,396,397, mkqglqlrlsqqlaMTPQLQqAIrllqlstlelqqelqqalesnpllelpvyqgettqtlqdylmwqveltpftdtdraiatsivdavddtgyltiqiedivdsigddeigleeveavlkriqrfdpvgvaakdlrdclliqlsqfaketpwleearliisdhldllanhdfrtlmrvtrlkeevlkeavnliqsldprpgqsiqtsepeyvipdvlvrkvsgrwtvelnadsiprlkinqqyaamgnsarndadgqfirsnlqearWliKSleSrndtllrvsrciveqqqaffeqgeeymkpmvladiaqavemHeSTiSRvttqkylhsprgifelkyffsshvntegggeasstairalvkkliaaenpakplsdskltsmlseqgimvaRRTvakyreslsippsnqrkqlv > 7qv9_b interface=85, maeykdnllgeansflevleqvshlapldkpvliigergtgkeliasrlhylssrwqgpfislncaalnenlldselfgheagaFtgaqkrhpgrferadggtlfldelatapmmvqekllrvieygelervggsqplqvnvrlvcatnadlpamvnegtfradlldrlafdvvqlpplreresdimlmaeyfaiqmcreiklplfpgfteraretllnyrwpgnirelknvversvyrhgtsdyplddiiidpfkrr
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Sun Dec 17 11:23:29 2023