interface graph thumbnail
legend  pdf

structure nameTRANSCRIPTION FACTOR CDX2 BOUND TO HYDROXYMETHYLATED DNA
(Homeobox protein CDX-2)
referenceMorgunova et al. 'To ? ? ?
sourceHomo sapiens
experimentX-ray (resolution=3.20, R-factor=0.240)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
reference complex6es3_K
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYRIQN

Estimated binding specificities ?

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# IC=5.766 IC/col=0.961 n_of_columns=6 specificity:   
A |   0   0   0  96  13  16
C |   0   0   0   0  16  13
G |   0   0   0   0  13  54
T |  96  96  96   0  54  13
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updated Mon Dec 18 23:33:41 2023