structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC3)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;P-loop containing nucleoside triphosphate hydrolases;
reference complex5oqj_M 5oqj_O 5oqj_R 5oqj_U 5sva_Z 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRR/K/NVFLTNVFLVT/RVLVQNKLLSK/DVA

Estimated binding specificities ?

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# IC=9.581 IC/col=0.274 n_of_columns=35 specificity:   
A |   0   0  13  96   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24  96   3  85   3
C |   0   0  13   0  87  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  17  24   0   3   3   3
G |   0  96   5   0   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24   0   5   5   5
T |  96   0  65   0   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54  24   0  85   3  85
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updated Sun Dec 17 07:13:19 2023