structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC1)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;P-loop containing nucleoside triphosphate hydrolases;
reference complex5oqj_M 5oqj_O 5oqj_Q 5oqj_R 5oqj_X 5sva_Z 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRQ/SIM//NFLFVNVFLFT/RKLVREGARD/RLVETNKLLDK/LDLARVQQLSE/AEGFPESEALG

Estimated binding specificities ?

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# IC=7.162 IC/col=0.149 n_of_columns=48 specificity:   
A |   0  24  24  24  24  24  24  24   0  48  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  10  10  96  24  24   0
C |   5  24  24  24  24  24  24  24  96  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  10  16   0  24  24   0
G |   5  24  24  24  24  24  24  24   0  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   5  17   0  24  24   0
T |  86  24  24  24  24  24  24  24   0  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96  71  53   0  24  24  96
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updated Sun Dec 17 07:03:28 2023