7kbd_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION) (HISTONE H2A)
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK
redundant complexes	7kbe 7kbf
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7kbd_C interface=1,29, KasrsakaglqfpvgrihrllrkgnyavRigsgsaiylaatleylcaevlelagnaardnkklrimprhiqlavrnddelaklfegvtiadggvlpniqsallp

  
  --------RT                                               +1u35_G    
                                            +--------------1 
  --------RT                 +--------------2              +7lyb_G    
                             !              ! 
  --------RA               +-3              +--------------6t7a_C    
                           ! ! 
  --RAETRT--             +-4 +-----------------------------4ne1_p    
                         ! ! 
  RT--------           +-5 +-----------------------------7v9c_H    
                       ! ! 
  --------RT         +-6 +-----------------------------7wlr_E    
                     ! ! 
  --------RT       +-7 +-----------------------------7lya_E    
                   ! ! 
  --------RT     --8 +-----------------------------7zs9_e    
                   ! 
  ----IT--RA       +-----------------------------7k78_E

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updated Tue Dec 19 18:42:56 2023