7k04_7A : 3D-footprint complex

structure name	STRUCTURE OF TFIIH/RAD4-RAD23-RAD33/DNA IN DNA OPENING
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;TFB5-like;
reference complex	5sva_Z 7k04_5
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7k04_7 interface=309,332,334, padfvpdsvsgmfrshdfsylrlrpdhasrplwispsdgriilesfsplaeqaqdflvtiaepisrpshiheykitayslyaavsvgletddiisvldrlskvpvaesiinfikgatisygkvklvikhnryfvettqadilqmllndsvigplridsdhqvqppedvlereeedddidavhsfeianesvevvkkrcqeidypvleeydfrndhrnpdldidlkpstqirpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflqwctlqpencavftsDnkemfqtesglvvstysmvantRnRshdsqkvmdfltgrewgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflskvgdtsidlpeatcliqisshygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllkneea > 7k04_A interface=359,381,382,385,433,435,437,439,473,476,478,486, ydseefedvtdgnevrnvcsneerkrrkyfhmlylvclmvhgfirnewinskrlsrklsnlvpekvfellhpqkdeelplrstrklldglkkcmelwqkhwkitkkydneglymrtwkeiemsannkrkfktlkrsdflravskghgdpdisvqgfvamlracnvnarlimscqppdftnmkidtslngnnaykdmvkypifwcevwdkfskkwitvdpvnlktieqvrlhsklapkgvaccernmlryviaydrkygcrdvtrryaqwmnskvrkrritkddfgekwfrkvitalhhrkrtkiddyedqyffrrdesegipdsvqdlknhpyyvleqdikqtqivkpgckecgylkvHgkvgkvlkvyakrdiadlksaRQwyMngrilktgsrckkvikrtveederlysfedtelyipplasasgeitkNtFgNiEvfaptmipgncclvenpvaikaarflgvefapaVtsFkFergstvkPvlsgivvakwlreaietaidgswntlllklrirsklns
interface signature	DRR/HRQMNFNEVFFP

Estimated binding specificities ?

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# IC=5.339 IC/col=0.297 n_of_columns=18

specificity:

A |  11  24  96  96   0  24  24  24  24  24  24  24  24  24  24  24   9  67
C |   9  24   0   0   0  24  24  24  24  24  24  24  24  24  24  24  69  11
G |  67  24   0   0   0  24  24  24  24  24  24  24  24  24  24  24   9   9
T |   9  24   0   0  96  24  24  24  24  24  24  24  24  24  24  24   9   9

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updated Sun Dec 17 04:10:09 2023