7f9h_B : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF ENRR-DNA (EnrR repressor)
reference	Wang et al. 'Nucleic 50 3777 2022
source	Edwardsiella piscicida
experiment	X-ray (resolution=1.78, R-factor=0.202)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	7f9h_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7f9h_B interface=7,33,37,40,41,43, saqdwhRadivaalhkrgitlaglsrahglaaRtlsNamERhYpraerliaqaldmrpediwpqryrn
interface signature	RRNERY

Estimated binding specificities ?

readout + contact

# IC=5.067 IC/col=0.844 n_of_columns=6

specificity:

A |   0  24   0  72   0  64
C |   0   8   8  16   0   8
G |   0  56   0   8  96  16
T |  96   8  88   0   0   8

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT--------RG----NT--ETRTYA   L                      +---7f9h_B    
                                   +------------------2 
  --QT--STNTVTATSTQTETTT----   L   !                  ! +--2r1j_L    
                                 --3                  +-1 
  ----AT--QAAT--SA----------       !                    +--4z5h_A    
                                   ! 
  --------QASTCTSART--ET----   L   +----------------------5j2y_A

home
updated Tue Dec 19 18:18:14 2023