7ckq_CDFGI : 3D-footprint complex

structure name	THE CRYO-EM STRUCTURE OF B. SUBTILIS BMRR TRANSCRIPTION ACTIVATION COMPLEX
source	BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168)
experiment	NMR
structural superfamily	Probable bacterial effector-binding domain;Putative DNA-binding domain;
reference complex	1r8e_A 7ckq_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ckq_C interface=236,239,240,353, vqygrhrqrrsyarisevlelpnlieiqtssyqwfldeglremfqdispiedftgnlslefidyslgepkypveeskerdvtysaplrvkvrlinketgevkdqdvfmgdfpimtdtgtfiingaervivsqlvrspsvyfsgkvdkngkkgftatvipnrgawleyetdakdvvyvridrtrklpvtvllralgfgsdqeildligeneylrntldkdntensdkalleiyerlRpgEPptvenakslldsrffdpkrydlanvgrykinkklhiknrlfnqyieeeiknitpadiissisyffnllhgvgdtddidhlgnrrlrsvgellqnqfriglsrmervvrermsIqdtntitpqqlinirpviasikeffgssqlsqfmdqtnplaelthkrrlsalgpggltreragmevrdvhyshygrmcpietpegpniglinslssyakvnrfgfietpyrrvdpetgkvtgridyltadeednyvvaqanarlddegafiddsivarfrgentvvsrnrvdymdvspkqvvsaatacipflenddsnralmganmqrqavplmqpeapfvgtgmeyvsgkdsgaavickhpgiverveaknvwvrryeevdgqkvkgnldkysllkfvrsnqgtcynqrpivsvgdevvkgeiladgpsmelgelalgrnvmvgfmtwdgynyedaiimserlvkddvytsihieeyeseardtklgpeeitrdipnvgedalrnlddrgiirigaevkdgdllvgkvtpkgvteltaeerllhaifgekarevrdtslrvphggggiihdvkvfnredgdelppgvnqlvrvyivqkrkisegdkmagrhgnkgviskilpeedmpylpdgtpidimlnplgvpsrmnigqvlelhmgmaarylgihiaspvfdgareedvwetleeagmsrdaktvlydgrtgepfdnrvsvgimymiklahmvddklharstgpyslvtqqplggkaqfggqrfgemevwaleaygaaytlqeiltvksddvvgrvktyeaivkgdnvpepgvpesfkvlikelqslgmdvkil > 7ckq_D interface=297, feymniglaspdkirswsfgevkkpetinyrtlkpekdglfcerifgptkdwechcgkykrvrykgvvcdrcgvevtrakvrrermghielaapvshiwyfkgipsrmglvldmspraleeviyfasyvvtdpantplekkqllsekeyrayldkygnkfqasmgaeaihkllqdidlvkevdmlkeelktsqgqrrtraikrlevleafrnsgnkpswmildvlpvippelrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapsiivqnekrmlqeavdalidngrrgRpvtgpgnrplkslshmlkgkqgrfrqnllgkrvdysgrsvivvgphlkmyqcglpkemalelfkpfvmkelvekglahniksakrkiervqpevwdvlesvikehpvllnraptlhrlgiqafeptlvegrairlhplvctaynadfdgdqmavhvplsaeaqaearilmlaaqnilnpkdgkpvvtpsqdmvlgnyyltleragavgegmvfkntdeallayqngyvhlhtrvavaanslqrskllittvgklvfneilpesfpymneptksnieedvkaviaqqpinapfkkgilgkiiaeifkrfhitetskmldrmknlgfkystkagitvgvsdivvlddkqeileeaqskvdnvmkqfrrgliteeeryervisiwsaakdviqgklmksldelnpiymmsdsgargnasnftqlagmrglmanpagriielpikssfregltvleyfisthgarkgladtalktadsgyltrrlvdvaqdviiretdcgtdrgilakplkegtetierleerligrfarkqvkhpetgevlvnenelidedkaleiveagieevwirsaftcntphgvckrcygrnlatgsdvevgeavgiiaaqsigepgtqltglpriqelfearnpatiteidgtvveinevrdkqqeivvqgavetrsytapynsrlkvaegdkitrgqvltegsidpkellkvtdlttvqeyllhevqkvyrmqgveigdkhvevmvrqmlrkvrvgdtdvlpgtlldihqfteankkvllegnrpatgrpvllgitkasletdsflsaasfqettrvltdaaikgkrdellglkenviigklvpagtgmmkyrkvkp > 7ckq_F interface=3,7,16,21,42,45,46,50,79,82,86,87,89,90,92,93,94,96,97,100,101,114,115,234,245,246,248,249, dpVrmyLkeigrvnlLsakeEiayaqkieegdeeskrrlaeAnlRLvvsIakryvgrgmlfldliqegnmglmkavekFdyRkgyKFsTYaTWWiRQaiTRaiadqartiripVHmvetinklirvqrqllqdlgreptpeeiaedmdltpekvreilkiaqepvsletpigeeddshlgdfiedqeatspsdhaayellkeqledvldtltdreenvlrlrfglddgrtrtlEevgkvfgvtrERiRQieakalrklrhpsrskrlkdfle > 7ckq_G interface=19,22,23,41,42, kesyysigevsklanvsiKalRYydkidlfkpayvdpdtsYRyytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria > 7ckq_I interface=19,22,23,41,42, kesyysigevsklanvsiKalRYydkidlfkpayvdpdtsYRyytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria
interface signature	REPI/R/VLLEARLIFRKFTYTWWRQTRVHEERRQ/KRYYR/KRYYR

Estimated binding specificities ?

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# IC=33.301 IC/col=0.951 n_of_columns=35

specificity:

A |   0   0   0  87  24  24  24   2  24   0   0   5   0  24   2  24  96   0   5  87   0   0   2   0   0  96  24  78  96   0   0   0   0  90   5
C |   0   0   0   2  24  24  24   5  24  96  96  87   0  24   5  24   0   0   5   5   0   0   5   0   0   0  24   5   0   0   0   0   0   2   2
G |   0   0  96   2  24  24  24   2  24   0   0   2   0  24  87  24   0  96  84   2  96  96   2   0   0   0  24   8   0   0  96  96  96   2  87
T |  96  96   0   5  24  24  24  87  24   0   0   2  96  24   2  24   0   0   2   2   0   0  87  96  96   0  24   5   0  96   0   0   0   2   2

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updated Sun Dec 17 01:02:15 2023