7ce1_OP : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_O interface=5,16,17,18,20,21,28,55,56, erptLktiaymtglgITTvSRalkdapDigaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpivsisgsstialvagfeaagvrigkdidskqsaeflnwiqpqihtvnediklagrelakallarinppetlqsvsrpvwss > 7ce1_P interface=5,17,18,20,28,29,55,56, erptLktiaymtglgiTTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphkdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvwss
interface signature	LITTSRDLR/LTTSDILR

Estimated binding specificities ?

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# IC=14.952 IC/col=0.997 n_of_columns=15

specificity:

A |   0   0   0   0  88  24   0   0   3   3  15   0  84   0  72
C |  96   0   0  96   3  24  96   0  15   5   3  93   3   0  19
G |   0   0  96   0   3  24   0  96  11   0  63   0   6  96   0
T |   0  96   0   0   2  24   0   0  67  88  15   3   3   0   5

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updated Sun Dec 17 00:58:31 2023