7bef_ACDFG : 3D-footprint complex

structure name	STRUCTURES OF CLASS II BACTERIAL TRANSCRIPTION COMPLEXES
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / KLEBSIELLA PNEUMONIAE / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bef_A interface= teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrfdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwpp > 7bef_C interface=149,173,175,180,181,197,198,365,369,392,471,502,512,539,540, ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhRspgvffdsdkgkthssgkvlynaRiIpyrgSWldfefdpkdnlfvriDRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiYrmmRpgepptreaaeslfenlffsedRydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveRavkerlslgdldtlmpqdminakpisaavkEffgssqlsqFmdqnnplseithkrrisalgpggltrERagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 7bef_D interface=245,306,412,413,776,777, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggRfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgsNkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnrAPtlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 7bef_F interface=21,24,27,32,38,266,268,269,275,276,277,279,280,306,308,311,312,313,315,316,320,324,326,338,341,344,347,351,385,386,388,392,394,399,400,405,467,471, aaaqvlssveseigrttdpvRmyMreMgtveLltregEidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaesidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiaKKYtNRglqfldliqegniglmkavdkfeyrRgYkfSTYaTWwirQaitRsIadqartiripvHmiEtiNklNrisRqmlqemgreptpeelaermlmpedkirkvlkiaKEpIsmeTpIgddeDShlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtReriRqieakalrklrhpsrsevlrsfldd > 7bef_G interface=35,36,39,40,85,86,90,94, tisaqvidtivewiddnlhqplriddiarhagysKWhlQRlflqykgeslgryirerklllaardlrdtdqrvydiclkygfdsQQtftRvftRtfnqppgayrke
interface signature	/RRISWDRYRRREFER/RNAPTA/RMMLENRLKKYNRRYSTYTWQRIHENNRKEITIDSFRR/KWQRQQRR

Estimated binding specificities ?

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# IC=39.093 IC/col=0.738 n_of_columns=53

specificity:

A |  96   0   0   3   0   0  96   0   8   0  96   0   0   0   0  96   0   0  24   4  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24   0   3   3   4   0   0   9  76   2  24  24  24  24  24   0   0   0  96
C |   0   0  96   2   0   0   0   0   8   0   0   0   0  96   0   0   0   0  24  11  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   2   2   6   0   0  73   6   2  24  24  24  24  24   0  96   0   0
G |   0  96   0  89  96  96   0  96  11   0   0   0   0   0   0   0  96   0  24  73  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   2   2   6  96   0   8   8   2  24  24  24  24  24  96   0   0   0
T |   0   0   0   2   0   0   0   0  69  96   0  96  96   0  96   0   0  96  24   8  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  96  89  89  80   0  96   6   6  90  24  24  24  24  24   0   0  96   0

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updated Sun Dec 17 00:20:45 2023