7apd_ABF : 3D-footprint complex

structure name	BOVINE PAPILLOMAVIRUS E1 DNA HELICASE-REPLICATION FORK COMPLEX
source	BOVINE PAPILLOMAVIRUS
experiment	NMR
structural superfamily	Origin of replication-binding domain, RBD-like;P-loop containing nucleoside triphosphate hydrolases;
reference complex	1ksy_A 2gxa_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7apd_A interface=49,52,200, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqaKhvKdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkshfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldlideeedseedgdsm > 7apd_B interface=155, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqakhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkShfwlasladtraalvddathacwryfdtylrnaldgypvsidrkhkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldlideeedseedgdsmrtftc > 7apd_F interface=49,155,200, tekfdfgtmvqwaydhkyaeeskiayeyalaagsdsnaraflatnsqaKhvkdcatmvrhylraetqalsmpayikarcklatgegswksiltffnyqnielitfinalklwlkgipkknclafigppntgksmlcnslihflggsvlsfanhkShfwlasladtraalvddathacwryfdtylrnaldgypvsidrkHkaavqikappllvtsnidvqaedrylylhsrvqtfrfeqpctdesgeqpfnitdadwksffvrlwgrldlideeedseedgdsmrt
interface signature	KKH/S/KSH

Estimated binding specificities ?

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# IC=3.142 IC/col=0.349 n_of_columns=9

specificity:

A |   0  24  24  24   0  24  13  24  13
C |   0  24  24  24   0  24  13  24  13
G |  96  24  24  24   0  24  13  24  16
T |   0  24  24  24  96  24  57  24  54

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updated Sun Dec 17 00:12:17 2023