6w1a_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF STREPTOCOCCUS DYSGALACTIAE SHP PHEROMONE RECEPTOR RGG2 BOUND TO DNA
reference	Capodagli et al. Proc.Natl.Acad.Sci.USA 117 24494 2020
source	Streptococcus dysgalactiae
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6w1a_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6w1a_A interface=27,28,29,30,32,33, kelgktlrrlrqgkqvsissladehlSKSQiSRfergeseiscsrllnlldklnitidefvsthskththfftllsrvrkyyaeknvakllklledyahkdyestmikailssieptvepseeevtrltdylfsveqwgyyeiillgncsrfinyntlflltkemvtsfayseqnktnktlvtqlsincliisidysyfdhshyliekiefllrdelnfyektvflyvhgyyklkqgqvsgkddmrqalqifkylgedalyysykehyrkevlg > 6w1a_B interface=26,28,29,31,32,35, elgktlrrlrqgkqvsissladehlSkSQiSRfeRgeseiscsrllnlldklnitidefvsthskththfftllsrvrkyyaeknvakllklledyahkdyestmikailssieptvepseeevtrltdylfsveqwgyyeiillgncsrfinyntlflltkemvtsfayseqnktnktlvtqlsincliisidysyfdhshyliekiefllrdelnfyektvflyvhgyyklkqgqvsgkddmrqalqifkylgedalyysykehyrkevlg
interface signature	SKSQSR/SSQSRR

Estimated binding specificities ?

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# IC=4.559 IC/col=0.380 n_of_columns=12

specificity:

A |   4   8   3  61  23  22  25  25  17  95   8  60
C |  82  64  85  12  27  24  23  23  40   0  70  12
G |   5  10   5  12  24  23  23  24  17   1   6  12
T |   5  14   3  11  22  27  25  24  22   0  12  12

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updated Sat Dec 16 20:17:14 2023