6vw0_CDFJM : 3D-footprint complex

structure name	MYCOBACTERIUM TUBERCULOSIS RNAP S456L MUTANT OPEN PROMOTER COMPLEX
source	MYCOBACTERIUM TUBERCULOSIS
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vw0_C interface=152,182,199,276,374,392,434,438,1033, nsvpgapnrvsfaklreplevpglldvqtdsfewligsprwresaaergdvnpvggleevlyelspiedfsgsmslsfsdprfddvkapvdeckdkdmtyaaplfvtaefinnntgeiksqtvfmgdfpmmtekgtfiingtervvvsqlvRspgvyfdetidkstdktlhsvkvipsrgaWlefdvdkrdtvgvridRkrrqpvtvllkalgwtseqiverfgfseimrstlekdntvgtdealldiyrklrpgepptkesaqtllenlffkekRydlarvgrykvnkklglhvgepitsstlteedvvatieylvrlhegqttmtvpggvevpvetddidhfgnrrlrtvgeliqnqirvgmsrmervvreRmttqdveaitpqtliniRpvvaaikeffgtsqlsqfmdqnnplsglthkrrllalgpggLsreRaglevrdvhpshygrmcpietpegpnigligslsvyarvnpfgfietpyrkvvdgvvsdeivyltadeedrhvvaqanspidadgrfveprvlvrrkageveyvpssevdymdvsprqmvsvatamipflehddanralmganmqrqavplvrseaplvgtgmelraaidagdvvvaeesgvieevsadyitvmhdngtrrtyrmrkfarsnhgtcanqcpivdagdrveagqviadgpctddgemalgknllvaimpweghnyedaiilsnrlveedvltsihieeheidardtklgaeeitrdipnisdevladldergivrigaevrdgdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgesgkvigirvfsrededelpagvnelvrvyvaqkrkisdgdklagrhgnkgvigkilpvedmpfladgtpvdiilnthgvprrmnigqilethlgwcahsgwkvdaakgvpdwaarlpdelleaqpnaivstpvfdgaqeaelqgllsctlpnrdgdvlvdadgkamlfdgrsgepfpypvtvgymyimklhhlvddkiharstgpysmitqqplggkaQfggqrfgemecwamqaygaaytlqelltiksddtvgrvkvyeaivkgenipepgipesfkvllkelqslclnvevlss > 6vw0_D interface=332,333,336,391,396,399,429,503,504,869,870, gamldvnffdelriglataedirqwsygevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekiiyfaayvitsvdeemrhnelstleaemaverkavedqrdgelearaqkleadlaeleaegakadarrkvrdggeremrqirdraqreldrlediwstftklapkqlivdenlyrelvdrygeyftgamgaesiqklienfdidaeaeslrdvirngkgqkklralkrlkvvaafqqsgnspmgmvldavpvippelrpmvqLDggRfatsdlndlyrrvinrnnrlkrlidlgapeiivnnekrmlqesvdalfdngrrgRpvtgPgnRplkslsdllkgkqgrfrqnllgkrvdysgRsvivvgpqlklhqcglpklmalelfkpfvmkrlvdlnhaqniksakrmverqrpqvwdvleeviaehpvllnrAPtlhrlgiqafepmlvegkaiqlhplvceafnadfdgdqmavhlplsaeaqaearilmlssnnilspasgrplamprldmvtglyylttevpgdtgeyqpasgdhpetgvysspaeaimaadrgvlsvrakikvrltqlrppveieaelfghsgwqpgdawmaettlgrvmfnellplgypfvnkqmhkkvqaaiindlaerypmivvaqtvdklkdagfywatrsgvtvsmadvlvpprkkeildhyeeradkvekqfqrgalnhdernealveiwkeatdevgqalrehypddnpiitivdsgatgnftqtrtlagmkglvtnpkgefiprpvkssfregltvleyfinthgarkgladtalrTAdsgyltrrlvdvsqdvivrehdcqtergivvelaerapdgtlirdpyietsayartlgtdavdeagnvivergqdlgdpeidallaagitqvkvrsvltcatstgvcatcygrsmatgklvdigeavgivaaqsigepgtqltmrtditgglprvqelfearvprgkapiadvtgrvrledgerfykitivpddggeevvydkiskrqrlrvfkrvlsdgdhvevgqqlmegsadphevlrvqgprevqihlvrevqevyraqgvsihdkhievivrqmlrrvtiidsgsteflpgslidraefeaenrrvvaeggepaagrpvlmgitkaslatdswlsaasfqettrvltdaaincrsdklnglkenviigklipagtginryrniavqpteearaaa > 6vw0_F interface=21,23,24,27,35,41,94,96,97,108,112,130,131,134,136,139,140,141,143,144,145,147,148,152,165,166,169,172,176,179,214,216,217,220,225,228,233,294,295,296,297,299,300, edesealrqarkdaeltasaDsVRayLkqigkvaLlnaeeEvelakrieaglyatqlmtelsergeklpaaqrrdmmwicrdgdraknhlleaNlRLvvslakrytgRgmaFldliqegnlgliravekFDytKgYkfSTYaTWWiRQaitRamadqartiripVHmvEviNklgRiqRellqdlgreptpeelakemditpekvleiqqyarEpISldQtigdEgdSqlgdFiedseavvavdavsftllqdqlqsvldtlsereagvvrlrfgltdgqprtldeigqvygvTRERiRQiesktmsklrhpsrsqvlrdyl > 6vw0_J interface=2,4, dRvLrgsrlgavsyetdrnhdlaprqiaryrtdngeefevpfaddaeipgtwlcrngmegtliegdlpepkkvkpprthwdmllerrsieeleellkerlelirsrrrg > 6vw0_M interface=84,85,88,89, ifkvgdtvvyphhgaalveaietrtikgeqkeylvlkvaqgdltvrvpaenaeyvgvrdvvgqegldkvfqvlraphteeptnWSrrYKanleklasgdvnkvaevvrdlwrrdqerglsagekrmlakarqilvgelalaestddakaetildevlaa
interface signature	RWRRRRLRQ/LDRRPRRAPTA/DVRLLENRLRFFDKYSTYTWWRQRVHENRREISQESFTRERRQ/RL/WSYK

Estimated binding specificities ?

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# IC=27.023 IC/col=0.693 n_of_columns=39

specificity:

A |  96   0  16  24  24   0   0   0  96   0   0   0   0  96  96  11  96  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  50   0   0   0  91  96   0
C |   0  96  48  24  24   0  96  96   0   0   0  96   0   0   0  16   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  11   0   0  96   0   0   0
G |   0   0  16  24  24  96   0   0   0  96   0   0   0   0   0  13   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  19  96   0   0   0   0  96
T |   0   0  16  24  24   0   0   0   0   0  96   0  96   0   0  56   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  16   0  96   0   5   0   0

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updated Sat Dec 16 19:53:10 2023