6vvy_CDFJM : 3D-footprint complex

structure name	MYCOBACTERIUM TUBERCULOSIS WT RNAP TRANSCRIPTION OPEN PROMOTER COMPLEX WITH SORANGICIN
source	MYCOBACTERIUM TUBERCULOSIS
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vvy_C interface=182,199,276,390,392,434,435,438,1033, nsvpgapnrvsfaklreplevpglldvqtdsfewligsprwresaaergdvnpvggleevlyelspiedfsgsmslsfsdprfddvkapvdeckdkdmtyaaplfvtaefinnntgeiksqtvfmgdfpmmtekgtfiingtervvvsqlvrspgvyfdetidkstdktlhsvkvipsrgaWlefdvdkrdtvgvridRkrrqpvtvllkalgwtseqiverfgfseimrstlekdntvgtdealldiyrklrpgepptkesaqtllenlffkekRydlarvgrykvnkklglhvgepitsstlteedvvatieylvrlhegqttmtvpggvevpvetddidhfgnrrlrtvgeliqnqirvgmsrmervvrermttqdveaitpqtliNiRpvvaaikeffgtsqlsqfmdqnnplsglthkrrlsalgpggLSreRaglevrdvhpshygrmcpietpegpnigligslsvyarvnpfgfietpyrkvvdgvvsdeivyltadeedrhvvaqanspidadgrfveprvlvrrkageveyvpssevdymdvsprqmvsvatamipflehddanralmganmqrqavplvrseaplvgtgmelraaidagdvvvaeesgvieevsadyitvmhdngtrrtyrmrkfarsnhgtcanqcpivdagdrveagqviadgpctddgemalgknllvaimpweghnyedaiilsnrlveedvltsihieeheidardtklgaeeitrdipnisdevladldergivrigaevrdgdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgesgkvigirvfsrededelpagvnelvrvyvaqkrkisdgdklagrhgnkgvigkilpvedmpfladgtpvdiilnthgvprrmnigqilethlgwcahsgwkvdaakgvpdwaarlpdelleaqpnaivstpvfdgaqeaelqgllsctlpnrdgdvlvdadgkamlfdgrsgepfpypvtvgymyimklhhlvddkiharstgpysmitqqplggkaQfggqrfgemecwamqaygaaytlqelltiksddtvgrvkvyeaivkgenipepgipesfkvllkelqslclnvevlss > 6vvy_D interface=332,336,391,396,399,504,869,870, gamldvnffdelriglataedirqwsygevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekiiyfaayvitsvdeemrhnelstleaemaverkavedqrdgelearaqkleadlaeleaegakadarrkvrdggeremrqirdraqreldrlediwstftklapkqlivdenlyrelvdrygeyftgamgaesiqklienfdidaeaeslrdvirngkgqkklralkrlkvvaafqqsgnspmgmvldavpvippelrpmvqLdggRfatsdlndlyrrvinrnnrlkrlidlgapeiivnnekrmlqesvdalfdngrrgRpvtgPgnRplkslsdllkgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpklmalelfkpfvmkrlvdlnhaqniksakrmverqrpqvwdvleeviaehpvllnraPtlhrlgiqafepmlvegkaiqlhplvceafnadfdgdqmavhlplsaeaqaearilmlssnnilspasgrplamprldmvtglyylttevpgdtgeyqpasgdhpetgvysspaeaimaadrgvlsvrakikvrltqlrppveieaelfghsgwqpgdawmaettlgrvmfnellplgypfvnkqmhkkvqaaiindlaerypmivvaqtvdklkdagfywatrsgvtvsmadvlvpprkkeildhyeeradkvekqfqrgalnhdernealveiwkeatdevgqalrehypddnpiitivdsgatgnftqtrtlagmkglvtnpkgefiprpvkssfregltvleyfinthgarkgladtalrTAdsgyltrrlvdvsqdvivrehdcqtergivvelaerapdgtlirdpyietsayartlgtdavdeagnvivergqdlgdpeidallaagitqvkvrsvltcatstgvcatcygrsmatgklvdigeavgivaaqsigepgtqltmrtditgglprvqelfearvprgkapiadvtgrvrledgerfykitivpddggeevvydkiskrqrlrvfkrvlsdgdhvevgqqlmegsadphevlrvqgprevqihlvrevqevyraqgvsihdkhievivrqmlrrvtiidsgsteflpgslidraefeaenrrvvaeggepaagrpvlmgitkaslatdswlsaasfqettrvltdaaincrsdklnglkenviigklipagtginryrniavqpteearaaa > 6vvy_F interface=21,23,24,27,35,41,94,96,97,108,112,130,131,134,136,139,140,141,143,144,145,147,148,152,165,166,169,172,176,179,214,216,217,220,222,224,225,227,228,233,294,295,296,297,299,300, edesealrqarkdaeltasaDsVRayLkqigkvaLlnaeeEvelakrieaglyatqlmtelsergeklpaaqrrdmmwicrdgdraknhlleaNlRLvvslakrytgRgmaFldliqegnlgliravekFDytKgYkfSTYaTWWiRQaitRamadqartiripVHmvEviNklgRiqRellqdlgreptpeelakemditpekvleiqqyarEpISldQtIgDEgDSqlgdFiedseavvavdavsftllqdqlqsvldtlsereagvvrlrfgltdgqprtldeigqvygvTRERiRQiesktmsklrhpsrsqvlrdyl > 6vvy_J interface=3,4, drVLrgsrlgavsyetdrnhdlaprqiaryrtdngeefevpfaddaeipgtwlcrngmegtliegdlpepkkvkpprthwdmllerrsieeleellkerlelirsrrrg > 6vvy_M interface=84,85,89, ifkvgdtvvyphhgaalveaietrtikgeqkeylvlkvaqgdltvrvpaenaeyvgvrdvvgqegldkvfqvlraphteeptnWSrryKanleklasgdvnkvaevvrdlwrrdqerglsagekrmlakarqilvgelalaestddakaetildevlaa
interface signature	WRRNRLSRQ/LRRPRPTA/DVRLLENRLRFFDKYSTYTWWRQRVHENRREISQIDEDSFTRERRQ/VL/WSK

Estimated binding specificities ?

contact

# IC=27.567 IC/col=0.672 n_of_columns=41

specificity:

A |  96  96   0  24   7   0   0   0   0  96   0   7   0   0  96  96  24  24  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9   0   0  96  96   0  73
C |   0   0  96  24  73   0   0  96  96   0   0   7  96   0   0   0  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0  96   0   0   0   9
G |   0   0   0  24   7   0  96   0   0   0  96   9   0   0   0   0  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  73   0   0   0   0  96   7
T |   0   0   0  24   9  96   0   0   0   0   0  73   0  96   0   0  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  96   0   0   0   0   7

scan!

home
updated Sat Dec 16 19:47:06 2023