6vvv_FT : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MYCOBACTERIUM SMEGMATIS TRANSCRIPTION INITIATION COMPLEX WITH RIFAMPICIN-RESISTANT RNA POLYMERASE
reference	Campbell et al. Proc.Natl.Acad.Sci.USA 117 30423 2020
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	5tw1_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vvv_F interface=125,126,129,132,133,146,147,150,265,275,276,277,278,280,281, adsvraylkqigkvallnaeeevelakrieaglyatqklaelaekgeklpvqqrrdmqwicrdgdraknhlleanlrlvvslakrytgrgmafldliqegnlgliravekfdytkgykfstyatWWirQaiTRamadqartiripVHmvEvinklgriqrellqdlgreptpeelakemditpekvleiqqyarepisldqtigdegdsqlgdfiedseavvavdavsftllqdqlqsvletlsereagvvrlrfgltdgqprtLdeigqvygvTRERiRQiesktmsklrhpsrsqvlrdy > 6vvv_T interface=9, iddldltvRsynclkregvhtvgelvartesdlldirnfgqksidevkiklhq
interface signature	WWQTRVHELTRERRQ/R

Estimated binding specificities ?

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# IC=12.734 IC/col=0.509 n_of_columns=25

specificity:

A |   6   0   6   0  84   0  78  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0   0   0   6
C |  78   0   6   0   6  96   6  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0   0  96   0
G |   6   0   6  96   6   0   6  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0  96   0   0
T |   6  96  78   0   0   0   6  24  24  24  24  24  24  24  24  24  24  24  24  78  24  96   0   0  90

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updated Sat Dec 16 19:43:59 2023