interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6uph_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG------                                                  +7k6p_D    
                                         +------------------1 
  RG------                    +----------6                  +3x1t_H    
                              !          ! 
  ------RT                  +-8          +------------------8g57_E    
                            ! ! 
  ------RA                  ! +-----------------------------1kx5_G    
                            ! 
  ------RT                  !                            +--1u35_G    
                          +-9              +-------------2 
  ------RG                ! !            +-4             +--7uv9_E    
                          ! !            ! ! 
  --LC----                ! !         +--5 +----------------8bvw_e    
                          ! !         !  ! 
  ------RT             +-10 !         !  !           +----7lyb_G    
                       !  ! +---------7  +-----------3 
  ----LTRC             !  !           !              +----3kwq_E    
                       !  !           ! 
  ------RT          +-11  !           +-------------------8cww_A    
                    !  !  !  
  --LC--RT          !  !  +-----------------------------8byq_e    
                 +-12  !  
  --LT--RC       !  !  +-----------------------------6jm9_A    
               -13  !  
  ------RG       !  +-----------------------------7yqk_E    
                 !  
  ------RT       +-----------------------------7zs9_e    
               

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updated Tue Dec 19 15:00:12 2023