6ujx_AB : 3D-footprint complex

structure name	HIV-1 WILD-TYPE REVERSE TRANSCRIPTASE-DNA COMPLEX WITH (-)-FTC-TP
reference	'Commun 2 469 2019 Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	5j2m_B 7ozw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ujx_A interface=94,115,150,154,176,177,251,441,468, pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsiryqynvlpqgwkgsPaifQssmtkilepfrkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiCklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnrgrqkvvtltdttnQktelqaiylalqdsglevnivtdsqyalgiiqaqpdqseselvnqiieqlikkekvylawvpahkgiggneqvdklvsag > 6ujx_B interface= ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdphpaglkkkksVtvldvgdayfsvpldedfrkYtaftipsinnetpgiryqynvlpqgwkgspaifqSsmtKilepfrkqnpdiviyqymddlYVgsdleigqhrtkieelrqhllrwgelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskLlrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql
interface signature	IYPQYMCRQ/VYSKYVL

Estimated binding specificities ?

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# IC=3.752 IC/col=0.221 n_of_columns=17

specificity:

A |   0   0  24  24  17  24  24  24  24  24  24  24  24  24  24  96  19
C |   0   8  24  24  52  24  24  24  24  24  24  24  24  24  24   0  43
G |  96  80  24  24  17  24  24  24  24  24  24  24  24  24  24   0  17
T |   0   8  24  24  10  24  24  24  24  24  24  24  24  24  24   0  17

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updated Sat Dec 16 19:06:51 2023