6uit_AB : 3D-footprint complex

structure name	HIV-1 WILD-TYPE REVERSE TRANSCRIPTASE-DNA COMPLEX WITH DCTP
reference	'Commun 2 469 2019 Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	5j2m_B 7ozw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6uit_A interface=94,150,176,177,251,346,438,465, pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipgiryqynvlpqgwkgsPaifqssmtkilepfrkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiCklvgklnwasqiypgikvrqlskllralteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnrgrqkvvtltdttnQktelqaiylalqdsglevnivtdsqyalgiiqaqpdqseselvnqiieqlikkekvylawvpahkgiggneqvdklvsag > 6uit_B interface= ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkdstkwrklvdfrelnkrtqdfphpaglkkkksVtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqSsmtkilepfrkqnpdiviyqymddlYVgsdleigqhrtkieelrqhllryelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlsklLrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmhtndvkqlteavqkittesiViwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql
interface signature	IPYMCRRQ/VSYVLV

Estimated binding specificities ?

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# IC=4.592 IC/col=0.270 n_of_columns=17

specificity:

A |   6  10  24  24  24  24  24  24  24  24  24  24  26  24  15   0   0
C |   0   5  24  24  24  24  24  24  24  24  24  24  15  24  26  96  96
G |  90   5  24  24  24  24  24  24  24  24  24  24  40  24  40   0   0
T |   0  76  24  24  24  24  24  24  24  24  24  24  15  24  15   0   0

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updated Sat Dec 16 19:06:23 2023