6t78_AB : 3D-footprint complex

structure name	STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A SHORT DNA FRAGMENT
reference	Dodonova et al. Nature 580 669 2020
source	Homo sapiens
experiment	X-ray (resolution=2.50, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6t78_A interface=6,9,11,12,19,31,32,35,73,75, sghikRpmNaFMvwskieRrkimeqspdmhNAeiSkrlgkrwkmlkdsekipfireaerlrlkhmadypdykYrPrk > 6t78_B interface=4,7,9,10,17,29,30,33,71, hikRpmNaFMvwskieRrkimeqspdmhNAeiSkrlgkrwkmlkdsekipfireaerlrlkhmadypdykYrpr
interface signature	RNFMRNASYP/RNFMRNASY

Estimated binding specificities ?

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# IC=12.778 IC/col=1.065 n_of_columns=12

specificity:

A |  89   6  96  72   0  96  96  90   7   0   6   0
C |   0  78   0  12   0   0   0   0   6   0   8   0
G |   6   6   0   6   0   0   0   6   0   0  70   0
T |   1   6   0   6  96   0   0   0  83  96  12  96

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updated Sat Dec 16 18:25:28 2023