6rwe_ABMQR : 3D-footprint complex

structure name	RNA POLYMERASE I OPEN COMPLEX CONFORMATION 2
source	SACCHAROMYCES CEREVISIAE
experiment	NMR
reference complex	5w5y_P 5w5y_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6rwe_A interface=511,512,932,933,1401, iskpvgseitsvdfgiltakirnlsakqitnptvldnlghpvsgglydlalgaflrnlcstcgldekfcpghqghielpvpcynplffnqlyiylrasclfchhfrlksvevhryacklrllqyglidesykldeitldisstllnelkskrseyvdmaiakalsdgrttergsftatvnderkklvhefhkkllsrgkcdncgmfspkfrkdgftkifetalnekqitnnrvkgfiktgstyilstevknildtvfrkeqcvlqyvfhsrpnlsrklvkadsffmdvlvvpptrfrlpsklgeevhensqnqllskvlttsllirdlnddlsklrvifsrlmnafvtiqndvnafidstkaqgrtsgkvpipgvkqalekkeglfrkhmmgkrvnyaarsvispdpnietneigvppvfavkltypepvtayniaelrqavingpdkwpgatqiqnedgslvsligmsveqrkalanqlltpssnvsthtlnkkvyrhiknrdvvlmnrQPtlhkasmmghkvrvlpnektlrlhyantgaynadfdgdemnmhfpqnenaraealnlantdsqyltptsgspvrgliqdhisagvwltskdsfftreqyqqyiygcirpedghttrskivtlpptifkpyplwtgkqiittvllnvtppdmpginlisknkikneywgkgslenevlfkdgallcgildksqygaskygivhslhevygpevaakvlsvlgrlftnyitataftcgmddlrltaegnkwrtdilktsvdtgreaaaevtnldkdtpaddpellkrlqeilrdnnksgildavtsskvnaitsqvvskcvpdgtmkkfpcnsmqamalsgakgsnvnvsqimcllgqqalegrrvpvmvsgktlpsfkpyetdamaggyvkgrfysgikpqeyyfhcmagreglidtavkTSrsgylqrcltkqlegvhvsydnsirdadgtlvqfmyggdaiditkeshmtqfefcldnyyallkkynpsaliehldvesalkyskktlkyrkkhskephykqsvkydpvlakynpakylgsvsenfqdklesfldknskgvnekkfralmqlkymrslinpgeavgiiasqsvgepstqmtlntfnvtlgiprlreivmtasaaiktpqmtlpiwndvsdeqadtfcksiskvllsevidkvivtettarsyvihmrffdnneyseeydvskeelqnvisnqfihlleaaivkeikkqkrveannnmnkvqrdrqsaiishhrfitkynfddesgkwcefklelaadtekllmvniveeicrksiirqiphidrcvhpepengkrvlvtegvnfqamwdqeafidvdgitsndvaavlktygveaarntivneinnvfsryaisvsfrhldliadmmtrqgtylafnRqgmetstssfmkmsyettcqfltkavldnereqldspsarivvgklnnvgtgsfdvlakvpna > 6rwe_B interface=203,378,379,438,489,492,493,495,497,801, rtadfrtleresrfinppkdksafpllqeavqphigsfnaltegpdggllnlgvkdigekvifdgkplnsedeisnsgylgnklsvsveqvsiakpmsndverkvypsesrqrltsyrgklllklkwsvnngeenlfevrdcgglpvmlqsnrchlnkmspyelvqhkeesdeiggyfivngieklirmlivqrrnhpmaiiRpsfanrgasyshygiqirsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalchtsdreifdgiigndvkdsfltdrlelllrgfkkryphlqnrtqvlqylgdkfrvvfqaspdqsdlevgqevldrivlvhlgkdgsqdkfrmllfmirklyslvagecspdnPDatqhqevllggflygmilkekideylqniiaqvrmdinrgmainfkdkrymsrvlmrvNenigskmqyflstgnlvsqsgldlqqvsgytvvaekinfyrfishfrmvhRgsFFaQlKtttvrkllpeswgflcpvhtpdgspcgllnhfahkcristqqsdvsripsilyslgvapashtfaagpslccvqidgkiigwvsheqgkiiadtlrywkvegktpglpidleigyvppstrgqypglylfgghsrmlrpvrylpldkedivgpfeqvymniavtpqeiqnnvhthveftptnilsilanltpfsdfnqsprnmyqcqmgkqtmgtpgvalchrsdnklyrlqtgqtpivkanlyddygmdnfpngfnavvavisytgydmddamiinksadergfgygtmyktekvdlalnrnRgdpitqhfgfgndewpkewlekldedglpyigtyveegdpicayfddtlnktkiktyhssepayieevnligdesnkfqelqtvsikyrirrtpqigdkfssrhgqkgvcsrkwptidmpfsetgiqpdiiinphafpsrmtigmfveslagkagalhgiaqdstpwifneddtpadyfgeqlakagynyhgnepmysgatgeelradiyvgvvyyqrlrhmvndkfqvrstgpvnsltmqpvkgrkrhggirvgemerdalighgtsfllqdrllnssdytqasvcrecgsilttqqsvprigsistvccrrcsmrfedakkgekifiddsqiwedgqgnkfvggnetttvaipfvlkyldselsamgirlrynvepk > 6rwe_M interface=378,382, seieiesvqdqpsvavgsffkgfrapsdttfdlykkkksekdefvlhgenerleyegytdsssqasnqyvvglfnpekksiqlykapvlvskvvskssknlrgpkiksksdtrpsalrnalgeafgtkkakkaiadlernridsdkltdsaidivdsvrtaskdlptraqldeitdrptplanidatdveqiypiesiipkkelqfirvssilkeadkekklelfpyqnnskyvakkldsltqpsqmtklqllyylslllgvyenrrvnnktkllerlnsppeilvdgilsrftvikpgqfgrskdrsyfidpqnedkilcyilaiimhldnfiveitplahelnlkpskvvslfrvlgaivkgatvaqaeafgipkStaaSykiatmkvpf > 6rwe_Q interface=44,203,204,207,287,288, tfirgpicgtdncpsrlwriidgrrtcqyghvmegdvefnddeDlgagvitrrlnlttnatgsfqssqltnsqllqqqqrqshkkfkkligheakllflksfqfilkrqirwlitemrfpkefehvakiiwlkilktindqpqeelklqlhmtstisilylasthlslpvytcdyikwictakmpyfqaseilpkswriqlpNYyvSilegsispfngqlynkialtcgmihfkeffnseiscqglllklvmqcalppefyfytkqviefeetdirnltlwertdeRHtgrvsnhaelrvlsyfmltinwmlsfdrdrqyplkwilsltesltqrtttsesigrnivkvvypdkptssdyfqwseeetleflkwmekqflptdqkiarrklykifpldreanhdgefndsthqltfiedlqeryakqtpffpparkeaigrllthiasqllvdfaiskeqlkdcisriknaclhrmn > 6rwe_R interface=11, mfevpitltnRkfaqrrklkyqyinyisrrfdriskkssdeerkfwkkyekpeksfeiwrtvssqnkqpinkqkmtyhnfkkiekiplrkmeipllhctkenklyfqsisrgleplktstsevrnyrtrhivtltdllhlnvsrhnwslaykifatliripgvqikslwgigveildnlsnsssgldflqwmcqiyssksrfvqninyrsivppfqtgsrthtakfaitylwsslincqksmlidkisewvltppfmedaevwfiyaschllkadtlsrqfvnrdikinqvikhihyvrtflkicldkggfavpsrlienqlksfesrly
interface signature	QPTSR/RPDNRFFQKR/SS/DNYSRH/R

Estimated binding specificities ?

contact

# IC=21.503 IC/col=0.717 n_of_columns=30

specificity:

A |   0   4   0   0  87  24   5  96  96  96  24  24  24  24  24  24  24   0   0   8  24   4  96  96   0  24  24  84  96   8
C |   0   4   0   0   0  24   4   0   0   0  24  24  24  24  24  24  24   0   0  75  24   4   0   0   0  24  24   4   0   8
G |   0  84   0  96   5  24  83   0   0   0  24  24  24  24  24  24  24  96  96   5  24  84   0   0  96  24  24   4   0  72
T |  96   4  96   0   4  24   4   0   0   0  24  24  24  24  24  24  24   0   0   8  24   4   0   0   0  24  24   4   0   8

scan!

home
updated Sat Dec 16 17:43:29 2023