6rar_I : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	PMAR-LIG_PRES3-MN (ATP-dependent DNA ligase)
reference	Leiros et al. 'Nucleic 47 7147 2019
source	Prochlorococcus marinus str. MIT 9302
experiment	X-ray (resolution=1.78, R-factor=0.234)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
redundant complexes	6ras_I 6rau_I 6rce_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6rar_I interface=226,381,423, elfkeeiihqlelhpsrldkekiiseamedgiddffegirmaldplvtfgvkivpekeseksqnflwedfrklanklmqreltghaardailtamesatkeewngfyrrvlikdlrcgvsektinkiakkfpkyaipifscplahdsanhekkmigkkqieikldgvrvltiirqnkvemfsrngkqfhnfghiileienvlkedpapydlvldgevmsanfqdlMkqvhrkdgkqtkdavlhlfdlcplenfqkgrwntkqtarsllvkkwvakhslllkhiqtlewenvdldtiqgqkrfvelnksaveggyegvmikdpdgmyeckrthswlkakpfievtlkvvsveegtgrnkgrlgailvegeddgyeyslscgSgfsdiqreeywskrkhllgqlveiradaktkskdgvafslrFprfkcfrgf

  
  ------------------MG----------------------------SA--------FC--                                 +---6rar_I    
                                                                                            +----1 
  --------------RA------NG--------------------------------FGLGIT                            !    +---6dt1_A    
                                                                              +-------------3 
  ------------------------------------------------ST--------FG--              !             !  +-----6bkg_A    
                                                                         +----4             +--2 
  RT--HT----------FT--RC--------------KG----------TT--------FG--   L     !    !                +-----6p0c_A    
                                                                       +-5    ! 
  ----------------FG------LC----------KG----------TA--------FC--       ! !    +----------------------6gdr_A    
                                                                     --6 ! 
  --YA--RAKAIAEA------------FAVA--------------------------------       ! +---------------------------2hvr_B    
                                                                       ! 
  ------------------------------RTKTNT--TTATTTWTRT--RTITET------   L   +----------------------------6irq_A

home
updated Tue Dec 19 14:34:38 2023