6qwf_AB : 3D-footprint complex

structure name	THE TRANSCRIPTIONAL REGULATOR PRFA-A94V MUTANT FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
reference	Sauer-Eriksson et al. J.Bacteriol. 202 ? 2020
source	Listeria monocytogenes
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qwf_A interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatvyvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 6qwf_B interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatvyvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSASR/HSASR

Estimated binding specificities ?

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# IC=8.786 IC/col=0.799 n_of_columns=11

specificity:

A |  90  96   6  78  24  24   0   0   6   0  12
C |   0   0  72   6  24  24   0   0   6   0  12
G |   6   0  12   6  24  24   0  96   6   0  66
T |   0   0   6   6  24  24  96   0  78  96   6

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updated Sat Dec 16 16:40:09 2023