| structure name | MUTY ADENINE GLYCOSYLASE BOUND TO DNA CONTAINING A TRANSITION STATE ANALOG (1N) PAIRED WITH UNDAMAGED DG (AG-specific adenine glycosylase) |
| reference | X-RAY DIFFRACTION |
| source | Geobacillus stearothermophilus |
| experiment | X-ray (resolution=2.00, R-factor=0.248) |
| structural superfamily | DNA-glycosylase;Nudix; |
| sequence family | HhHGPD superfamily base excision DNA r; Helixhairpinhelix motif; Ironsulfur binding domain of endonucle; |
| redundant complexes | 1rrq 1rrs 1vrl 3g0q 4yoq 4yph 4ypr 6u7t |
| reference complex | 8dvp_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--------QGTGRA----YCRG----------------------------SCHC +--------6q0c_A +------------1 ------------------YG------------------------ACCTRG---- ! +--------5kn8_A +----3 --------QGCGTA---------------------------------------- ! ! +------------1orn_A +-4 +--------2 ------AGNG------RCFC--RG----------------RATT---------- ! ! +------------3knt_A +-5 ! --------LG-------------------------------------------- ! ! +--------------------------3cws_D +-6 ! LTVTLTNGRGTG------LCLCRG--------------YT-------------- ! ! +--------------------------4ofa_A +-7 ! LTVTLTNGRGTG------LGLC----------------YT-------------- ! ! +---------------------------4evv_A +-8 ! ------AA--LA--IT--HTKT-------------------------------- ! ! +----------------------------2ofi_A +-9 ! ------------------------VT--QTNA--MTKT---------------- L ! ! +----------------------------1jgg_B -10 ! --------------------------NT----NA-------------------- L ! +----------------------------1b8i_B ! ------------------------KGSA--QA---------------------- L +----------------------------6j5b_C |
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updated Mon Dec 18 17:36:10 2023