6psw_IJLM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPO) WITH TRAR AND RPST P2 PROMOTER
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6psw_I interface=138,150,181,182,198,199,200,370,373,469,496,502,503,507,513,537,541,566,1263, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfviNgtervivsqlhRspgvffdsdkgkthssgkvlynariipyrgSWldfefdpkdnlfvriDRRrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmRpgEpptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRveravkerlslgdldtlmpqdminakPisaavKEffgSsqlsqFmdqnnplseithkrrisalgpggLtreRagfevrdvhpthygrvcpietpegPniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaQfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 6psw_J interface=244,306,337,411,412,775,776, efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggRfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgsnKrplksladmikgkqgrfrqnllgkrvdysgRsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnrAPtlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmrtfhissiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqkditgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraa > 6psw_L interface=9,13,16,21,22,243,245,246,256,279,280,283,285,288,289,290,292,293,297,325,328,365,375,377,382,443,444,445,446,449, eigrttdpVrmyMreMgtveLLtregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvddpelarekfaelraqyvvtrdtihataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNrglqfldliqegniglmkavdkFEyrRgYkfSTYaTWwirQaitrsiadqartiripvhmietinklnRisRqmlqemgreptpeelaermlmpedkirkvlkiakepIsmetpigddEdShlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvTRERirQieakalrklrhpsrsevlrsfldd > 6psw_M interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	NRSWDRRRERPKESFLRPQ/RKRAPTA/VMMLLNRLNFERYSTYTWQRRIESFTRERQ/R

Estimated binding specificities ?

contact

# IC=24.855 IC/col=0.637 n_of_columns=39

specificity:

A |  96   0   0   0   7   0  96   0   0  96  96   0  96   0   0   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96  73   9
C |   0   0   0  96  75   0   0   0   0   0   0   0   0   0   0  68  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   7   7
G |   0  96  96   0   7  96   0  96  96   0   0   0   0   0  96  14  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   7   7
T |   0   0   0   0   7   0   0   0   0   0   0  96   0  96   0   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0   9  73

scan!

home
updated Sat Dec 16 16:22:33 2023