6o6p_AB : 3D-footprint complex

structure name	STRUCTURE OF THE REGULATOR FASR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH DNA
reference	Trajtenberg et al. 'Nat 11 3703 2020
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=3.85, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	6o6p_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6o6p_A interface=36,37,38,41, rderrgqllvvasdvfvdrgyhaagmdeiadragvSKPvlYqhfssklelylavlhrhvenlvsgvhqalstttdnrqrlhvavqaffdfiehdsqgyrlifendfvtepevaaqvrvatescidavfalisadsgldphrarmiavglvgmsvdcarywldadkpisksdavegtvqfawgglshvp > 6o6p_B interface=35,36,37,40, derrgqllvvasdvfvdrgyhaagmdeiadragvSKPvlYqhfssklelylavlhrhvenlvsgvhqalstttdnrqrlhvavqaffdfiehdsqgyrlifendfvtepevaaqvrvatescidavfalisadsgldphrarmiavglvgmsvdcarywldadkpisksdavegtvqfawgglshvp
interface signature	SKPY/SKPY

Estimated binding specificities ?

readout + contact

# IC=7.150 IC/col=0.550 n_of_columns=13

specificity:

A |  12  96   0  24  24  24  24  24  19   0   0  90  12
C |  15   0   0  24  24  24  24  24  51   0   0   0  57
G |  57   0  96  24  24  24  24  24  12  96   0   0  15
T |  12   0   0  24  24  24  24  24  14   0  96   6  12

scan!

home
updated Sat Dec 16 14:55:22 2023