6ml7_A : 3D-footprint complex

structure name	ZBTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 4 WITH A CPG 5MC MODIFICATION) (Zinc finger and BTB domain-containing protein 24)
reference	Horton et al. 'Nucleic 47 8388 2019
source	Mus musculus
experiment	X-ray (resolution=1.75, R-factor=0.195)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	6ml4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ml7_A interface=44,46,47,50,71,72,74,75,100,101,102,103,105,106,128,130,131, gsksftcdqcgkyfsqkrqlkshyrvhtghslpecshchrkfmDvSQlkKhlrthtgekpftceicgksfTAkSSlqthirihrgekpyscsicgkcfsDSSAkRRhcilhtgkkpfscpecglqfaRlDNlkahlkihskek
interface signature	DSQKTASSDSSARRRDN

Estimated binding specificities ?

readout + contact

# IC=14.276 IC/col=1.098 n_of_columns=13

specificity:

A |  96   0   0   0   0   0   0   0   6  96  13   0  68
C |   0   0   0   0  89  96   7   0   9   0  61   0   6
G |   0  96  96   0   0   0   0  96  75   0   6  96   6
T |   0   0   0  96   7   0  89   0   6   0  16   0  16

scan!

home
updated Mon Dec 18 16:59:56 2023