6lc1_AD : 3D-footprint complex

structure name	STRUCTURAL BASIS OF NR4A1 BOUND TO THE HUMAN PITUITARY PROOPIOMELANOCORTIN GENE PROMOTER
reference	Jiang et al. Biochem.Biophys.Res.Commun. 523 1 2020
source	HOMO SAPIENS
experiment	X-ray (resolution=3.12, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6l6q_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lc1_A interface=11,14,20,23,27,28,81,83, rcavcgdnasCqhYgvrtcEgcKgffKRtvqknakyiclankdcpvdkrrrnrcqfcrfqkclavgmvkevvrtdslkgrRgRlps > 6lc1_D interface=12,15,21,24,28,29,82,84, grcavcgdnasCqhYgvrtcEgcKgffKRtvqknakyiclankdcpvdkrrrnrcqfcrfqkclavgmvkevvrtdslkgrRgRlp
interface signature	CYEKKRRR/CYEKKRRR

Estimated binding specificities ?

readout + contact

# IC=14.975 IC/col=0.681 n_of_columns=22

specificity:

A |   4   0  24   0  96   4  24  24  84   4  24  24  24   4  84  24  88   0   0  24   0  84
C |   4   0  24   0   0   4  24  24   4  84  24  24  24  84   4  24   4   0   0  24  96   4
G |   4  96  24   0   0   4  24  24   4   4  24  24  24   4   4  24   4   0  96  24   0   4
T |  84   0  24  96   0  84  24  24   4   4  24  24  24   4   4  24   0  96   0  24   0   4

scan!

home
updated Sat Dec 16 13:49:01 2023