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structure nameCRYSTAL STRUCTURE OF PLURIPOTENCY REPROGRAMMING FACTOR SOX17 MUTANT (SOX17EK) HMG DOMAIN BOUND TO DNA
(Transcription factor SOX-17)
referenceBalasubramanian et al.
sourceMus musculus
experimentX-ray (resolution=3.00, R-factor=0.196)
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
reference complex3f27_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNFMRHNASY

Estimated binding specificities ?

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# IC=6.517 IC/col=0.592 n_of_columns=11 specificity:   
A |  96   0  96  96   0  48  24  24  24  24  19
C |   0  96   0   0  19  20  24  24  24  24  48
G |   0   0   0   0   0   9  24  24  24  24  20
T |   0   0   0   0  77  19  24  24  24  24   9
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updated Mon Dec 18 16:07:59 2023